Package: ncmR 0.4.0

ncmR: Fit Neutral Community Model to Microbiome or Ecological Data

Provides tools for fitting the neutral community model (NCM) to assess the role of stochastic processes in community assembly. The package implements the framework of Sloan et al. (2006) <doi:10.1111/j.1462-2920.2005.00956.x>, enabling users to evaluate neutral dynamics in ecological and microbial communities.

Authors:Yuxuan He [aut, cre, cph]

ncmR_0.4.0.tar.gz
ncmR_0.4.0.zip(r-4.7-any)ncmR_0.4.0.zip(r-4.6-any)ncmR_0.4.0.zip(r-4.5-any)
ncmR_0.4.0.tgz(r-4.6-any)ncmR_0.4.0.tgz(r-4.5-any)
ncmR_0.4.0.tar.gz(r-4.7-any)ncmR_0.4.0.tar.gz(r-4.6-any)
ncmR_0.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ncmR/json (API)

# Install 'ncmR' in R:
install.packages('ncmR', repos = c('https://h-xuanjiu.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/h-xuanjiu/ncmr/issues

Datasets:
  • example_data - Example OTU table and grouping information for NCM demonstration

On CRAN:

Conda:

3.54 score 1 stars 2 scripts 354 downloads 4 exports 88 dependencies

Last updated from:dfe82269cc. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK147
source / vignettesOK227
linux-releaseOK144
macos-releaseOK117
macos-oldrelOK110
windows-develOK87
windows-releaseOK90
windows-oldrelOK81
wasm-releaseOK139

Exports:fit_ncmpie_plotrun_appscatter_plot

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercolorspacecolourpickercommonmarkcpp11crosstalkcurldata.tabledigestdplyrDTevaluatefarverfastmapfontawesomeforeignFormulafsgenericsggplot2ggtextgluegridExtragridtextgtablehighrHmischtmlTablehtmltoolshtmlwidgetshttpuvisobandjpegjquerylibjsonliteknitrlabelinglaterlazyevallifecyclelitedownmagrittrmarkdownmemoisemimeminiUIminpack.lmnnetotelpillarpkgconfigpngpromisesR6rappdirsRColorBrewerRcpprlangrmarkdownrpartrstudioapiS7sassscalesshinyshinyjssourcetoolsstringistringrsystemfontstibbletidyselecttinytexutf8vctrsviridisLitewithrxfunxml2xtableyamlzip